PP_007JWMK.1

Brazil/ITpS_C1w_001nm_001/2026-05-21
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-21
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.1

Host

Host
Host age
0.5
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
6816

Submission details

Submission ID
ITpS_C1w_001nm_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15265 (100%)
# of SNPs
154
# of inserted bases
50
# of deleted bases
7

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • A276G
  • A473G
  • G513T
  • G579A
  • C628T
  • T935C
  • C998A
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • T2589C
  • C2691T
  • C2707T
  • C3000T
  • G3036C
Deletions
966, 967, 4580, 4581, 15216-15218
Insertions
ins_0:GC, ins_3:AGATGTGTTACAAACTTGCACACTCGGAAAAAATG, ins_15222:TTTTATTTCTCGT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:Q172L
  • F:L173S
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:V249A
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:S309P

L

  • L:N142S
  • L:V179A
  • L:K570R
  • L:N590S
  • L:P1729T
  • L:S1746Y
  • L:T1758I
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:K74E

NS2

  • NS2:Y118H
Deletions
N/A
Insertions
N/A

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