PP_007JWJR.1

Brazil/ITpS_qJ0_001nf_001/2026-05-19
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-19
Sampling location
Brazil (Minas Gerais)
City
Ibirité

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.2

Host

Host
Host age
2
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
2144

Submission details

Submission ID
ITpS_qJ0_001nf_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15245 (100%)
# of SNPs
159
# of inserted bases
35
# of deleted bases
12
# of frame shifts
1
Frame shifts
F:511-575(nt:7205-7400)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • G513T
  • G579A
  • C583T
  • G599A
  • C829T
  • A965C
  • G1028A
  • A1132G
  • G1385A
  • G1417A
  • A1507G
  • G1732A
  • G1768A
  • T1846C
  • C2074T
  • C2198T
Deletions
966, 967, 4580, 4581, 7200-7204, 15218-15220
Insertions
ins_0:ACAAACTTGCACACTCGAAAAAA, ins_15092:ATAT, ins_15222:TTTTATTT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:F12V
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:A116T
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:T254I
  • G:I268T
  • G:A269V
  • G:S275P
  • G:K276E
  • G:Y285H
  • G:S307L
  • G:*311Q

L

  • L:S169P
  • L:K570R
  • L:I1751V
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:S24N
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:D6N
Deletions

F

F:509, F:510
Insertions
N/A

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