PP_007JWHT.1

Brazil/ITpS_Haj_001ng_001/2026-05-20
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-20
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1

Host

Host
Host age
0.3
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
273

Submission details

Submission ID
ITpS_Haj_001ng_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
14570 (97.8%)
# of SNPs
163
# of inserted bases
1
# of deleted bases
426
# of unknown bases
113
# of frame shifts
1
Frame shifts
L:614-2167(nt:10356-15018)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C3G
  • T353A
  • T498C
  • G513T
  • G579A
  • C856T
  • T907C
  • C998A
  • C1015T
  • G1385A
  • A1606G
  • C1657T
  • G1732A
  • T1846C
  • C1868T
  • C2074T
  • C2198T
  • T2457C
Deletions
966, 967, 8447-8868, 10354, 10355
Insertions
ins_14703:C

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:A107T
  • G:T131A
  • G:I137T
  • G:N144Y
  • G:P214S
  • G:P221L
  • G:L250F
  • G:I252T
  • G:K256N
  • G:H257Y
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:V179A
  • L:K570R

M2-2

  • M2-2:I2T
  • M2-2:E25G
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I
Deletions

L

L:613
Insertions
N/A

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