PP_007JWFY.1

Brazil/ITpS_Jvj_001ny_001/2026-05-27
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-27
Sampling location
Brazil (Minas Gerais)
City
Ibirité

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
0.8
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
25601

Submission details

Submission ID
ITpS_Jvj_001ny_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
14581 (97.9%)
# of SNPs
155
# of inserted bases
12
# of deleted bases
426
# of unknown bases
100
# of frame shifts
1
Frame shifts
NS2:43-125(nt:708-958)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C3G
  • C152A
  • C212T
  • T233C
  • G513T
  • C564T
  • G579A
  • G709T
  • A713C
  • A717C
  • G955A
  • G1385A
  • C1591T
  • C1714A
  • G1719A
  • G1732A
  • T1846C
  • G1963A
Deletions
966, 967, 4580, 4581, 8447-8868
Insertions
ins_707:GTCTC, ins_3204:GAAAGAA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:I268T

L

  • L:Q243R
  • L:K260R
  • L:K570R
  • L:D589N
  • L:M646L
  • L:R864L
  • L:G1429V
  • L:Y1590H
  • L:R1759K
  • L:R1872K
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:W30L
  • M2-1:P31S
  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I
  • N:S208N

NS1

  • NS1:D32E

P

  • P:T72A
Deletions
N/A
Insertions

NS2

ins_NS2:41:C

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