PP_007JWD2.1

Brazil/ITpS_hM6_001nU_001/2026-05-08
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-08
Sampling location
Brazil (Minas Gerais)
City
Rio do Prado

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.1

Host

Host
Host age
4
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
8065

Submission details

Submission ID
ITpS_hM6_001nU_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15104 (98.7%)
# of SNPs
154
# of inserted bases
2
# of deleted bases
2
# of unknown bases
87
# of frame shifts
1
Frame shifts
G:251-311(nt:5396-5578)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • A276G
  • G513T
  • G579A
  • C628T
  • T935C
  • C998A
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • T2589C
  • C2691T
  • C2707T
  • C3000T
  • G3036C
  • A3060G
Deletions
973, 4586
Insertions
ins_5395:A, ins_5459:G

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:V249A

L

  • L:N142S
  • L:V179A
  • L:K570R
  • L:N590S
  • L:C1604Y
  • L:P1729T
  • L:S1746Y
  • L:T1758I
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:K74E

NS2

  • NS2:Y118H
Deletions
N/A
Insertions
N/A

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