PP_007JWC4.1

Brazil/ITpS_akQ_001nO_001/2026-05-01
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-01
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.2

Host

Host
Host age
0.6
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
6988

Submission details

Submission ID
ITpS_akQ_001nO_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15251 (100%)
# of SNPs
154
# of inserted bases
36
# of deleted bases
7

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • G513T
  • G579A
  • C583T
  • G599A
  • C829T
  • A965C
  • G1028A
  • A1132G
  • G1385A
  • G1417A
  • A1507G
  • G1732A
  • G1768A
  • T1846C
  • C2074T
  • C2198T
Deletions
966, 967, 4580, 4581, 15218-15220
Insertions
ins_0:ACAGAACTTGCACACTCGAAAAAA, ins_15092:ATAT, ins_15222:TTTTATTT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:A116T
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:T254I
  • G:I268T
  • G:A269V
  • G:S275P
  • G:K276E
  • G:Y285H
  • G:S307L
  • G:*311Q

L

  • L:S169P
  • L:K570R
  • L:I1751V
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:S24N
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:D6N
Deletions
N/A
Insertions
N/A

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