PP_007JW7E.1

Brazil/ITpS_TEy_001nu_001/2026-05-27
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-27
Sampling location
Brazil (Minas Gerais)
City
São Joaquim de Bicas

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.1.9

Host

Host
Host age
0.1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
801

Submission details

Submission ID
ITpS_TEy_001nu_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15209 (99%)
# of SNPs
244
# of inserted bases
17
# of deleted bases
6
# of unknown bases
131
# of frame shifts
1
Frame shifts
G:178-322(nt:5182-5617)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • T143C
  • A144T
  • A145C
  • A146T
  • A147T
  • C183T
  • G198A
  • T210C
  • A399G
  • A432G
  • A500T
  • C528A
  • G551A
  • G555A
  • T659C
Deletions
4592, 5180, 5181, 5351-5353
Insertions
ins_0:GTATAACAGAACTTGC, ins_5348:G

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A17V
  • F:S377N
  • F:I542V

G

  • G:P71L
  • G:H90Y
  • G:T118I
  • G:I134K
  • G:L142S
  • G:S174L

L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:A1479V
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:K1726R
  • L:G1731D
  • L:S1789F
  • L:H1897N
  • L:T2069N
  • L:Y2163N

M

  • M:M43I

M2-1

  • M2-1:N142Y
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

NS1

  • NS1:L25S
  • NS1:K26L

P

  • P:L55P

SH

  • SH:I38S
Deletions

G

G:177
Insertions
N/A

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