PP_007JW6G.1

Brazil/ITpS_o5J_001o0_001/2026-05-27
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-27
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.3

Host

Host
Host age
1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
1305

Submission details

Submission ID
ITpS_o5J_001o0_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15135 (99.9%)
# of SNPs
219
# of inserted bases
19
# of deleted bases
94
# of unknown bases
1
# of frame shifts
2
# of stop codons
1
Frame shifts
G:102-181(nt:4955-5193),G:283-322(nt:5497-5617)
Stop Codons
G:183

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T59C
  • T65A
  • C90T
  • C183T
  • T261C
  • C300T
  • A429T
  • T501C
  • T560C
  • G587T
  • A727T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • T1137C
  • T1218C
  • C1293T
Deletions
543, 3163-3181, 3190, 4586, 4954, 5426-5496
Insertions
ins_62:T, ins_67:G, ins_5193:G, ins_15115:TT, ins_15225:GTTTTTTAGTTTTT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:W183*
  • G:I185S
  • G:K204N
  • G:G224E
  • G:V225A
  • G:S243I
  • G:N255D

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:D1739E
  • L:H1804R

M2-1

  • M2-1:P120L
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

N

  • N:A164R
  • N:V352A

P

  • P:E49D
  • P:L55P
  • P:T92M
Deletions

G

G:259-282
Insertions
N/A

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