PP_007JW5J.1

Brazil/ITpS_kYX_001nz_001/2026-05-27
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-27
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.5.2

Host

Host
Host age
0.3
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
987

Submission details

Submission ID
ITpS_kYX_001nz_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15215 (100%)
# of SNPs
247
# of inserted bases
2
# of deleted bases
12
# of frame shifts
2
Frame shifts
G:132-322(nt:5045-5617),F:397-575(nt:6884-7421)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • A135T
  • C183T
  • T246C
  • G288A
  • T697C
  • T922C
  • A940C
  • T1004C
  • A1009G
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • A1078G
  • G1131A
Deletions
3148, 4592, 4596, 4597, 5043, 5044, 6882, 6883, 7513-7516
Insertions
ins_6891:G, ins_7586:A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:L6F
  • F:A103T
  • F:T122A
  • F:N228K

G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T107I
  • G:T130R

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:V601I
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:T1942I
  • L:V1943D

M

  • M:M73L

M2-1

  • M2-1:S176P

M2-2

  • M2-2:S22N
  • M2-2:S44N
  • M2-2:P52T

N

  • N:I104V
  • N:V352A

P

  • P:L55P
  • P:T69I
  • P:E239D
Deletions

F

F:395, F:396
Insertions
N/A

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