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PP_007JW3N.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/ITpS_Lx0_001nP_001/2026-05-01
A. Pérez,
R. Moreira &
J. Dutra
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-05-01
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage
Lineage
A.D.1.9
Host
Host
human (Homo sapiens)
Host age
0.6
Host gender
Male
Sequencing
Sequencing instrument
ILLUMINA
Depth of coverage
1362
Submission details
Submission ID
ITpS_Lx0_001nP_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28
Alignment and QC
Length
15120 (99.3%)
# of SNPs
235
# of inserted bases
2
# of deleted bases
4
# of frame shifts
2
Frame shifts
NS1:28-140(nt:151-489),M:103-257(nt:3532-3996)
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
T
143
C
A
144
T
A
145
C
A
146
T
A
147
T
C
183
T
G
198
A
T
210
C
A
399
G
A
500
T
C
528
A
G
551
A
G
555
A
T
659
C
G
664
A
Show more
Deletions
4592, 7554, 7555, 15110
Insertions
ins_150:C, ins_3531:T
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
A
17
V
F:
V
278
A
F:
S
377
N
F:
I
542
V
F:
K
561
N
F:
D
562
N
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
118
I
G:
I
134
K
G:
L
142
S
G:
P
222
L
G:
G
224
E
G:
L
226
H
G:
G
232
R
G:
T
235
A
G:
S
243
I
G:
G
254
E
G:
K
262
E
G:
I
265
L
G:
Y
273
H
G:
D
284
G
G:
Y
304
H
G:
T
320
A
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
A
1479
V
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
K
1726
R
L:
G
1731
D
L:
S
1789
F
L:
H
1897
N
L:
Y
2163
N
M
M:
M
43
I
M2-1
M2-1:
N
142
Y
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
N
N:
V
352
A
NS1
NS1:
L
25
S
NS1:
K
26
L
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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