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PP_007JW2Q.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/ITpS_uWf_001nW_001/2026-05-12
A. Pérez,
R. Moreira &
J. Dutra
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-05-12
Sampling location
Brazil (Minas Gerais)
City
João Monlevade
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage
Lineage
A.D.1.9
Host
Host
human (Homo sapiens)
Host age
2
Host gender
Male
Sequencing
Sequencing instrument
ILLUMINA
Depth of coverage
1003
Submission details
Submission ID
ITpS_uWf_001nW_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28
Alignment and QC
Length
15391 (100%)
# of SNPs
238
# of inserted bases
170
# of deleted bases
4
# of unknown bases
2
# of frame shifts
2
# of stop codons
1
Frame shifts
M:103-257(nt:3532-3996),L:147-2166(nt:8970-15029)
Stop Codons
L:145
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
T
143
C
A
144
T
A
145
C
A
146
T
A
147
T
C
183
T
G
198
A
T
210
C
A
399
G
A
500
T
G
551
A
G
555
A
T
659
C
G
664
A
T
697
C
Show more
Deletions
4582, 4583, 8968, 8969
Insertions
ins_0:GCGTATAACAAACTTGC, ins_3531:T, ins_10339:GAG, ins_10343:G, ins_15225:GTTTTTGACACTTTTTTTCTCGTAATTTAGTTAATATACATATAAACCAATTAGATTTGGATTTAAACTTATTCTTCCTAGATCAAAATGATAATTTTAGGATTAGTTCACTAGAAGTTATTAAAAATTATATAATTATTAATTTTAA
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
A
17
V
F:
S
377
N
F:
I
542
V
F:
S
573
R
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
118
I
G:
I
134
K
G:
L
142
S
G:
P
222
L
G:
G
224
E
G:
L
226
H
G:
G
232
R
G:
T
235
A
G:
S
243
I
G:
G
254
E
G:
K
262
E
G:
I
265
L
G:
Y
273
H
G:
D
284
G
G:
Y
304
H
G:
T
320
A
L
L:
G
144
V
L:
Q
145
*
M
M:
M
43
I
M2-1
M2-1:
N
142
Y
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
N
N:
V
352
A
NS1
NS1:
L
25
S
NS1:
K
26
L
NS2
NS2:
K
119
T
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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