PP_007JW1S.1

Brazil/ITpS_cdg_001nh_001/2026-05-20
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-20
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.1.9

Host

Host
Host age
1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
53764

Submission details

Submission ID
ITpS_cdg_001nh_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
14838 (97%)
# of SNPs
223
# of inserted bases
73
# of deleted bases
4
# of frame shifts
2
Frame shifts
M:103-257(nt:3532-3996),L:148-2166(nt:8971-15029)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • A399G
  • A500T
  • C528G
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • T922C
  • G1000A
  • C1012T
  • T1035A
  • T1048C
  • G1050A
  • C1194T
  • T1359C
  • G1662A
  • T1668C
Deletions
2292, 4592, 8969, 8970
Insertions
ins_3531:T, ins_5488:TATACAACATCCGGTCAAGAGGAAACCCTCCACTCAACCACCTCCGAAGGCCATCCAAGCCCATCACAAGTC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A17V
  • F:S377N
  • F:I542V

G

  • G:R8C
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:L142S
  • G:R151H
  • G:P222L
  • G:G224E
  • G:L226H
  • G:G232R
  • G:T235A
  • G:S243I
  • G:G254E
  • G:K262E
  • G:I265L
  • G:Y273H

L

  • L:N143D

M

  • M:M43I

M2-1

  • M2-1:N142Y
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

P

  • P:L55P

SH

  • SH:I38S
Deletions

L

L:147
Insertions

G

ins_G:307:GQEETLHSTTSEGYPSPSQVHTTS

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