PP_007JW0U.1

Brazil/ITpS_zRm_001nT_001/2026-05-09
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-09
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.3

Host

Host
Host age
0.1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
597

Submission details

Submission ID
ITpS_zRm_001nT_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15263 (99%)
# of SNPs
233
# of inserted bases
49
# of deleted bases
11
# of unknown bases
159
# of frame shifts
3
Frame shifts
N:165-392(nt:1601-2286),P:85-242(nt:2569-3043),G:228-322(nt:5331-5617)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T59C
  • T65A
  • C90T
  • C183T
  • T261C
  • C300T
  • C356G
  • C358G
  • T361G
  • A429T
  • T501C
  • T560C
  • G587T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • C1100T
Deletions
1599, 1600, 2567, 2568, 3206, 3207, 5330, 5653-5656
Insertions
ins_0:ATGTGTACAGACAAACTTGC, ins_62:T, ins_67:G, ins_3154:A, ins_15120:GAGACAG, ins_15225:GTTTTTGACACTTTTTTTC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:V225R
  • G:L226Q

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:H1804R

M2-1

  • M2-1:P120L
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

NS1

  • NS1:T96R
  • NS1:H97D
  • NS1:C98G

P

  • P:L55P
Deletions

G

G:227

N

N:164

P

P:84
Insertions
N/A

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