PP_007JVZW.1

Brazil/ITpS_ReH_001nw_001/2026-05-26
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-26
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.3

Host

Host
Host age
2
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
6969

Submission details

Submission ID
ITpS_ReH_001nw_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15263 (99.5%)
# of SNPs
227
# of inserted bases
44
# of deleted bases
6
# of unknown bases
71
# of frame shifts
1
Frame shifts
N:165-392(nt:1601-2286)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T59C
  • G63T
  • T64G
  • T66A
  • A67T
  • G74A
  • C90T
  • C183T
  • T261C
  • C300T
  • A429T
  • A432G
  • T501C
  • T560C
  • G587T
  • C1012T
  • G1034A
  • G1050A
Deletions
1599, 1600, 5653-5656
Insertions
ins_0:ATGTGTATAACAAACTTGC, ins_3154:A, ins_15115:T, ins_15225:GTTTTTGACACTTTTTTTCTCGT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:V225A
  • G:S243I
  • G:N255D
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:E271K

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:D1739E
  • L:H1804R

M2-1

  • M2-1:P120L
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

NS1

  • NS1:G2D

P

  • P:L55P
  • P:T92M
Deletions

N

N:164
Insertions
N/A

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