PP_007JVYY.1

Brazil/ITpS_QHc_001np_001/2026-05-22
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-22
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.3

Host

Host
Host age
0.6
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
97323

Submission details

Submission ID
ITpS_QHc_001np_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15269 (99.5%)
# of SNPs
229
# of inserted bases
48
# of deleted bases
4
# of unknown bases
71

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T59C
  • G63T
  • T64G
  • G74A
  • C90T
  • C183T
  • T261C
  • C300T
  • A429T
  • T501C
  • T560C
  • G587T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • T1137C
  • T1218C
Deletions
5653-5656
Insertions
ins_0:AAATGTGTATAACAAACTTGC, ins_67:G, ins_3154:A, ins_15116:TA, ins_15225:GTTTTTGACACTTTTTTTCTCGT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:V225A
  • G:S243I
  • G:N255D
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:E271K

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:H1804R

M2-1

  • M2-1:P120L
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:G2D

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue