PP_007JVU6.1

Brazil/ITpS_q87_001nk_001/2026-05-21
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-21
Sampling location
Brazil (Minas Gerais)
City
Lagoa Santa

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.5.2

Host

Host
Host age
0.5
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
7323

Submission details

Submission ID
ITpS_q87_001nk_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
14831 (97%)
# of SNPs
233
# of inserted bases
72
# of deleted bases
10

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T246C
  • C528T
  • T697C
  • T922C
  • A940C
  • T1004C
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • A1078G
  • G1079A
  • G1131A
  • C1189A
  • C1203T
  • G1248A
  • T1254C
  • T1281C
Deletions
2292, 3206, 3207, 4592, 7513-7516, 7558, 7559
Insertions
ins_5560:TACACAACACCTGGTCAAGAGGAGACCATCCACTCAACCACCTCCGAAGGATATCCAAGCTCATCACAAGCC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A103T
  • F:T122A

G

  • G:L20F
  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:T139N
  • G:Q140R
  • G:I141V
  • G:P206Q
  • G:K209R
  • G:P215L
  • G:G224E
  • G:K233R
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L

L

  • L:P171L
  • L:R256K
  • L:L505M
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:T1942I
  • L:V1943D

M

  • M:M73L

M2-1

  • M2-1:S176P

M2-2

  • M2-2:S44N

N

  • N:I104V
  • N:V352A

P

  • P:L55P
  • P:T69I
  • P:E239D
Deletions
N/A
Insertions

G

ins_G:306:PGQEETIHSTTSEGYPSSSQAHTT

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