PP_007JVT8.1

Brazil/ITpS_tHF_001o1_001/2026-05-27
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-27
Sampling location
Brazil (Minas Gerais)
City
Ibirité

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.3

Host

Host
Host age
0.9
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
52320

Submission details

Submission ID
ITpS_tHF_001o1_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
14837 (97%)
# of SNPs
216
# of inserted bases
73
# of deleted bases
5
# of frame shifts
1
Frame shifts
G:176-322(nt:5176-5617)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • A505T
  • A513G
  • C516T
  • G587T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • C1081T
  • T1088A
  • T1137C
  • G1205A
  • T1218C
  • T1326C
  • T1359C
  • G1368A
  • T1413A
  • T1422C
Deletions
2299, 5172-5175
Insertions
ins_3154:A, ins_5446:CTCTCAACCACCTCCAAAGGCTATCTAAGCCCATCACAAGTCTATACAACATCCGGTCAAGAGGAAACCCTC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:L23M
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K

L

  • L:P171L
  • L:K180R
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-1

  • M2-1:P120L
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

N

  • N:S32N
  • N:V352A

P

  • P:L55P
  • P:T92M
  • P:N217Y
Deletions

G

G:175
Insertions

G

ins_G:322:XXXXXXXXXXXXXXXXXXXXXX

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