PP_007JVSA.1

Brazil/ITpS_zhb_001nx_001/2026-05-26
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-26
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.1.9

Host

Host
Host age
3
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
10773

Submission details

Submission ID
ITpS_zhb_001nx_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
14986 (98.9%)
# of SNPs
237
# of inserted bases
6
# of deleted bases
72
# of frame shifts
2
Frame shifts
M:103-257(nt:3532-3996),G:282-322(nt:5493-5617)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • T143C
  • A144T
  • A145C
  • A146T
  • A147T
  • C183T
  • G198A
  • T210C
  • A399G
  • A500T
  • C528A
  • G551A
  • G555A
  • T659C
  • G664A
Deletions
3206, 4592, 5423-5492
Insertions
ins_0:GC, ins_3531:T, ins_10339:GAG

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A17V
  • F:S377N
  • F:I542V

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:L142S
  • G:P222L
  • G:G224E
  • G:L226H
  • G:G232R
  • G:T235A
  • G:S243I
  • G:G254E

L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:N603K
  • L:L1438Q
  • L:A1479V
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:K1726R
  • L:G1731D
  • L:S1789F
  • L:H1897N
  • L:T2069N
  • L:Y2163N

M

  • M:M43I

M2-1

  • M2-1:N121S
  • M2-1:N142Y
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

NS1

  • NS1:L25S
  • NS1:K26L

P

  • P:L55P

SH

  • SH:I38S
Deletions

G

G:258-281
Insertions

L

ins_L:603:S

Report an issue with this sequence or metadata

Create GitHub issue