PP_007JVRC.1

Brazil/ITpS_hT4_001nc_001/2026-05-17
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-17
Sampling location
Brazil (Minas Gerais)
City
Ibirité

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.7

Host

Host
Host age
2
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
5274

Submission details

Submission ID
ITpS_hT4_001nc_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15274 (100%)
# of SNPs
230
# of inserted bases
52
# of deleted bases
3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • C55T
  • T59C
  • T65A
  • G74A
  • C90T
  • C183T
  • T231C
  • G587T
  • T619C
  • G637A
  • C1012T
  • G1034A
  • G1049A
  • G1050A
  • G1077A
  • A1080G
  • T1359C
  • T1413A
Deletions
4586, 4587, 5648
Insertions
ins_0:ATGTGTATAAGAGACTTGC, ins_62:T, ins_67:G, ins_3154:A, ins_7586:AA, ins_15053:CAAAAA, ins_15115:T, ins_15225:GTTTTTGACACTTTTTTTCTC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:T13I

G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:P146L
  • G:R151Q
  • G:N178G
  • G:K221R
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L

L

  • L:P171L
  • L:R256K
  • L:C283Y
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:D1644E
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:R2117K

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V212M
  • N:V352A

NS1

  • NS1:G2D

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

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