PP_007JVQE.1

Brazil/ITpS_xk5_001nv_001/2026-05-26
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-26
Sampling location
Brazil (Minas Gerais)
City
Betim

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.5.2

Host

Host
Host age
0.6
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
4101

Submission details

Submission ID
ITpS_xk5_001nv_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
15268 (99.5%)
# of SNPs
249
# of inserted bases
48
# of deleted bases
5
# of unknown bases
71

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • A135T
  • C165T
  • C183T
  • C194T
  • T246C
  • C478A
  • C528T
  • T697C
  • T922C
  • A940C
  • T1004C
  • A1009G
  • A1021G
  • T1028C
  • G1050A
Deletions
3148, 7513-7516
Insertions
ins_0:GCTNAGATGTGTATAAGAGACTTGC, ins_4592:A, ins_15115:TT, ins_15222:AAAGTG, ins_15225:AAAACTTTTTCTTC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A103T
  • F:T122A

G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101Y
  • G:I134K
  • G:Q140R
  • G:I141V
  • G:P206Q
  • G:K209R
  • G:K212E
  • G:P215L
  • G:G224E
  • G:K233R
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:S283P

L

  • L:P171L
  • L:R256K
  • L:L315F
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:T1942I
  • L:V1943D

M

  • M:M73L

M2-1

  • M2-1:S176P

M2-2

  • M2-2:S44N

N

  • N:I104V
  • N:V352A

NS1

  • NS1:A42V
  • NS1:L137I

P

  • P:L55P
  • P:T69I
  • P:E239D
Deletions
N/A
Insertions
N/A

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