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PP_007JVPG.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/ITpS_8Kj_001no_001/2026-05-22
A. Pérez,
R. Moreira &
J. Dutra
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-05-22
Sampling location
Brazil (Minas Gerais)
City
Betim
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage
Lineage
A.D.5.2
Host
Host
human (Homo sapiens)
Host age
0.2
Host gender
Female
Sequencing
Sequencing instrument
ILLUMINA
Depth of coverage
61573
Submission details
Submission ID
ITpS_8Kj_001no_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28
Alignment and QC
Length
14837 (97%)
# of SNPs
236
# of inserted bases
73
# of deleted bases
5
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
T
246
C
C
478
A
C
528
T
T
697
C
T
922
C
A
940
C
T
1004
C
A
1009
G
A
1021
G
T
1028
C
G
1050
A
A
1051
C
A
1078
G
G
1079
A
G
1131
A
C
1189
A
C
1203
T
G
1248
A
Show more
Deletions
2292, 7513-7516
Insertions
ins_4592:A, ins_5560:TACACAACACCTGGTCAAGAGGAGACCATCCACTCAACCACCTCCGAAGGCTATCCAAGCTCATCACAAGCC
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
Y
G:
I
134
K
G:
Q
140
R
G:
I
141
V
G:
H
164
N
G:
P
206
Q
G:
K
209
R
G:
K
212
E
G:
P
215
L
G:
G
224
E
G:
K
233
R
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
Show more
L
L:
P
171
L
L:
R
256
K
L:
L
315
F
L:
L
505
M
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
G
1731
D
L:
R
1764
K
L:
T
1942
I
L:
V
1943
D
M
M:
M
73
L
M2-1
M2-1:
S
176
P
M2-2
M2-2:
S
44
N
N
N:
I
104
V
N:
V
352
A
NS1
NS1:
L
137
I
P
P:
L
55
P
P:
T
69
I
P:
E
239
D
Deletions
N/A
Insertions
G
ins_G:306:PGQEETIHSTTSEGYPSSSQAHTT
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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