PP_007JVNJ.1

Brazil/ITpS_DIA_001nR_001/2026-05-04
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-04
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.1.9

Host

Host
Host age
0.8
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
879

Submission details

Submission ID
ITpS_DIA_001nR_001
Submitting group
Date submitted
2026-08-28 13:44:16 UTC
Date released
2026-08-28 13:44:43 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
14722 (96.9%)
# of SNPs
230
# of inserted bases
3
# of deleted bases
58
# of unknown bases
22
# of frame shifts
3
Frame shifts
M:103-257(nt:3532-3996),F:563-575(nt:7383-7421),L:148-2166(nt:8971-15029)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • A399G
  • A500T
  • C528G
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • T922C
  • G1000A
  • C1012T
  • C1030T
  • T1035A
  • T1048C
  • G1050A
  • C1194T
  • T1359C
  • G1662A
Deletions
950-955, 2292, 4592, 5465-5512, 8969, 8970
Insertions
ins_3531:T, ins_7382:T, ins_7461:G

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A17V
  • F:S377N
  • F:I542V
  • F:K561N
  • F:D562N

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:L142S
  • G:P222L
  • G:G224E
  • G:L226H
  • G:G232R
  • G:T235A
  • G:S243I
  • G:G254E
  • G:K262E
  • G:I265L
  • G:Y304H
  • G:T320A

L

  • L:N143D

M

  • M:M43I

M2-1

  • M2-1:N121S
  • M2-1:N142Y
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

P

  • P:L55P

SH

  • SH:I38S
Deletions

G

G:272-287

L

L:147

NS2

NS2:119, NS2:120
Insertions
N/A

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