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PP_007JTSC.1
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Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
DENV-2/Brazil/ITpS_Rn2_001ob_001/2026-05-16
A. Pérez,
R. Moreira &
J. Dutra
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-05-16
Sampling location
Brazil (Minas Gerais)
City
Montes Claros
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage & Serotype
Lineage
2II_F.1.1.2
Serotype
DENV-2
Host
Host
human (Homo sapiens)
Host age
18
Host gender
Male
Sequencing
Sequencing instrument
ILLUMINA
Depth of coverage
268
Submission details
Submission ID
ITpS_Rn2_001ob_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-08-28 13:27:25 UTC
Date released
2026-08-28 13:29:04 UTC
Earliest release date
2026-08-28
Alignment and QC
Length
10397 (95.8%)
# of SNPs
824
# of inserted bases
10
# of deleted bases
11
# of unknown bases
124
# of frame shifts
4
# of stop codons
1
Frame shifts
NS3:478-618(nt:5951-6375),NS4A:42-127(nt:6497-6756),NS4B:134-248(nt:7224-7569),NS5:784-900(nt:9919-10269)
Stop Codons
NS3:438
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
54
T
G
61
A
A
122
G
C
126
T
G
168
A
A
177
G
G
210
A
T
226
C
A
228
G
G
252
A
A
276
G
G
294
A
G
297
A
T
312
C
A
324
G
T
330
C
T
336
C
T
384
C
Show more
Deletions
62, 63, 5950, 6493-6496, 7234, 7235, 9917, 9918
Insertions
ins_4237:ACA, ins_7223:G, ins_7227:ATGTGT
Amino acid substitutions
Substitutions called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
S
101
T
C:
M
104
I
C:
L
108
M
E
E:
M
6
I
E:
Q
52
H
E:
E
71
A
E:
R
120
T
E:
V
129
I
E:
H
149
N
E:
T
226
I
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
S
80
T
NS1:
I
88
V
NS1:
T
117
A
NS1:
S
125
P
NS1:
S
128
L
NS1:
Q
131
H
NS1:
K
174
R
NS1:
F
178
S
NS1:
N
222
S
NS1:
L
247
I
NS1:
I
264
T
NS1:
T
265
A
NS1:
K
272
R
NS1:
D
281
E
NS1:
R
324
K
NS2A
NS2A:
V
5
I
NS2A:
T
42
M
NS2A:
D
67
N
NS2A:
M
136
I
NS2A:
I
171
A
NS2B
NS2B:
L
21
F
NS2B:
G
36
D
NS2B:
V
59
I
NS2B:
K
60
R
NS2B:
D
63
E
NS3
NS3:
M
13
V
NS3:
K
15
R
NS3:
A
120
T
NS3:
I
140
V
NS3:
A
160
T
NS3:
R
186
K
NS3:
R
248
K
NS3:
A
263
T
NS3:
V
273
I
NS3:
I
333
M
NS3:
V
395
I
NS3:
E
438
*
NS3:
I
461
V
NS4A
NS4A:
D
23
N
NS4B
NS4B:
L
13
F
NS4B:
S
17
G
NS4B:
A
19
T
NS4B:
V
48
I
NS4B:
F
112
L
NS4B:
V
115
I
NS5
NS5:
I
5
T
NS5:
M
70
L
NS5:
R
98
K
NS5:
I
135
T
NS5:
T
176
I
NS5:
I
271
V
NS5:
V
335
I
NS5:
S
429
C
NS5:
R
430
G
NS5:
K
570
R
NS5:
G
605
V
NS5:
I
637
A
NS5:
Q
644
K
NS5:
S
676
N
NS5:
I
687
V
NS5:
C
780
F
NS5:
A
782
T
prM
prM:
D
29
N
prM:
V
31
M
prM:
K
52
N
prM:
T
82
A
prM:
M
83
T
prM:
V
120
A
prM:
I
127
V
prM:
M
135
I
prM:
H
148
Y
prM:
A
152
I
prM:
T
162
A
Deletions
NS3
NS3:477
NS4A
NS4A:40, NS4A:41
Insertions
NS2B
ins_NS2B:36:R
NS4B
ins_NS4B:248:X
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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