PP_007HULR.1

Sri_Lanka/PP_007HULR.1/2024-01-25
L. S. Karan, E. V. Radyuk & V. P. Bulanenko

Central Research Institute of Epidemiology, Department of molecular diagnostic and epidemiology

Sample details

Collection date
2024-01-25
Sampling location
Sri Lanka
Isolate name
Zika virus/H.sapiens/LKA/Peg/2024

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2024-02-17
NCBI update date
2024-02-17

Host

Host

Submission details

Submission ID
PP326314.1
Submitting group
Date submitted
2026-08-26 14:12:01 UTC
Date released
2026-08-26 14:14:59 UTC
Earliest release date
2024-02-17

Alignment and QC

Length
10708 (99.1%)
# of SNPs
150

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • G296A
  • A386G
  • T467C
  • A523G
  • T558C
  • T578C
  • G653A
  • T674C
  • A692C
  • C869T
  • C878T
  • C896T
  • T1067C
  • C1073T
  • G1143A
  • A1175G
  • A1448G
  • C1616T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

E

  • E:V56I

NS1

  • NS1:E146K
  • NS1:A233T
  • NS1:E309D
  • NS1:V349M

NS2A

  • NS2A:I154V
  • NS2A:G187R
  • NS2A:K188R

NS3

  • NS3:M334T
  • NS3:R560K
  • NS3:H584Y

NS4A

  • NS4A:E99D

NS4B

  • NS4B:I26M
  • NS4B:I240T

NS5

  • NS5:V114M
  • NS5:P139S
  • NS5:T229I
  • NS5:M377I
  • NS5:T830A
  • NS5:I876M

pr

  • pr:N17S

prM

  • prM:N17S
Deletions
N/A
Insertions
N/A

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