PP_007BRVP.1

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Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Portugal/PTTiCCHFVCE7c_INSA2024/2024-11-16

Libia Ze-Ze, Vitor Borges, Daniel Sobral & Joao Paulo Gomes

Instituto Nacional de Saúde Doutor Ricardo Jorge

Sample details

Collection date

2024-11-16

Sampling location

Portugal (Nisa, Portalegre)

Data use terms

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Lineage

Segment S Lineage

III

Host

hard ticks; hardbacked ticks; scale ticks (Hyalomma lusitanicum)

Submission details

Submission ID

PTTiCCHFVCE7c_INSA2024

Submitting group

Genomics and Bioinformatics Unit @ INSA, Portugal

Date submitted

2026-08-06 13:28:40 UTC

Date released

2026-08-06 13:29:36 UTC

Earliest release date

2026-08-06

Alignment and QC

Length M

5318 (99.1%)

# of SNPs M

149

Length L

12111 (99.8%)

# of SNPs L

273

# of inserted bases L

Length S

1616 (96.6%)

# of SNPs S

130

# of inserted bases S

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

T62C
T65C
T70C
C75T
G93A
T151C
T184G
T254A
A298G
C313T
G334A
T340C
G370A
C427T
T466A
T550G
G553A
C568T

M

T68C
C217T
T259C
C269T
C320T
C354T
T360C
A377G
T385C
G393A
C404T
T406C
C410T
G414A
C426T
C428T
C431T
G456A

S

C31T
G47C
A50G
G54A
G67A
G99A
G100A
C178A
T181C
G189A
T199C
G202A
G229A
C235T
A247G
G271A
T283C
C295T

Deletions

N/A

Insertions

L

ins_12108:TTCATCGTCATCGTTATTATCTTGGGGTGTGGG

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references