PP_007BRUR.1

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Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Portugal/PTHuCCHFV79532_INSA2024/2024-07-19

Libia Ze-Ze, Vitor Borges, Daniel Sobral & Joao Paulo Gomes

Instituto Nacional de Saúde Doutor Ricardo Jorge

Sample details

Collection date

2024-07-19

Sampling location

Portugal (Bragança, Bragança)

Data use terms

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Lineage

Segment S Lineage

III

Host

human (Homo sapiens)

Submission details

Submission ID

PTHuCCHFV79532_INSA2024

Submitting group

Genomics and Bioinformatics Unit @ INSA, Portugal

Date submitted

2026-08-06 13:28:40 UTC

Date released

2026-08-06 13:29:36 UTC

Earliest release date

2026-08-06

Alignment and QC

Length M

5344 (99.6%)

# of SNPs M

151

Length L

12120 (99.8%)

# of SNPs L

261

# of inserted bases L

Length S

1630 (97.4%)

# of SNPs S

127

# of inserted bases S

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G32A
T65C
T70C
G93A
T151C
G190T
T254A
A298G
C313T
T340C
T418C
C427T
A428G
A460G
T550G
G553A
G619A
T665C

M

T29C
T68C
A70G
A178G
A203G
C217T
G236A
T259C
C264T
C269T
C320T
C356T
T360C
A377G
T385C
C404T
T406C
C410T

S

G47C
A50G
G54A
G67A
G99A
G100A
A130G
C178A
T181C
G189A
T199C
G202A
G229A
C235T
A247G
G271A
C295T
A298G

Deletions

N/A

Insertions

L

ins_12108:TTCATCGTCATCGTTATTATCTTGGGGTGTGGGGG

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references