PP_007A9QH.1

Brazil/ITpS_exu_001XK_001/2026-04-28
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-28
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1

Host

Host
Host age
0.8
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
16280

Submission details

Submission ID
ITpS_exu_001XK_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15244 (99.9%)
# of SNPs
168
# of inserted bases
37
# of deleted bases
4
# of frame shifts
1
Frame shifts
L:2059-2167(nt:14690-15018)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • T353A
  • T498C
  • G513T
  • G579A
  • C856T
  • T907C
  • C998A
  • C1015T
  • G1385A
  • A1606G
  • C1657T
  • G1732A
  • T1846C
  • C1868T
  • C2074T
  • C2198T
Deletions
966, 967, 14688, 14689
Insertions
ins_0:AACAATGTGTTAAACTTGCACACTCGAAAAAA, ins_14703:C, ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:A107T
  • G:T131A
  • G:I137T
  • G:N144Y
  • G:P214S
  • G:P221L
  • G:T225N
  • G:L250F
  • G:I252T
  • G:K256N
  • G:H257Y
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:V179A
  • L:K570R
  • L:L1031I
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:E25G
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I
Deletions

L

L:2058
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue