PP_007A9MP.1

Brazil/ITpS_63n_001XA_001/2026-04-25
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-25
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
96

Submission details

Submission ID
ITpS_63n_001XA_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15148 (96.5%)
# of SNPs
163
# of inserted bases
19
# of deleted bases
6
# of unknown bases
448
# of frame shifts
1
# of stop codons
1
Frame shifts
L:312-2167(nt:9450-15018)
Stop Codons
L:99

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • C152A
  • C212T
  • G513T
  • C564T
  • G579A
  • G955A
  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • T1846C
  • G1963A
  • C1996T
  • C2074T
  • C2198T
  • T2285A
Deletions
966, 967, 4580, 4581, 9448, 9449
Insertions
ins_0:CGGAAAAA, ins_3204:GAAAGAA, ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:N18H
  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L

L

  • L:S99*
  • L:K110I
  • L:K111H
  • L:Q243R
  • L:K260R
  • L:V309Q

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:N32S
  • M2-2:H33L
  • M2-2:K34I
  • M2-2:D35H
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:D32E

P

  • P:A13T
  • P:T72A
Deletions

L

L:311
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue