PP_007A9LR.1

Brazil/ITpS_59Q_001X4_001/2026-04-25
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-25
Sampling location
Brazil (Minas Gerais)
City
Betim

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.2

Host

Host
Host age
1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
512

Submission details

Submission ID
ITpS_59Q_001X4_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15247 (100%)
# of SNPs
164
# of inserted bases
32
# of deleted bases
7
# of unknown bases
3
# of stop codons
1
Stop Codons
F:513

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • G513T
  • G579A
  • C583T
  • G599A
  • C829T
  • A965C
  • G1028A
  • A1132G
  • G1385A
  • G1417A
  • A1507G
  • G1732A
  • G1768A
  • T1846C
  • C2074T
  • C2198T
Deletions
966, 967, 4580, 4581, 15216-15218
Insertions
ins_0:AACTTGCACACTCGAAAAAA, ins_15092:ATAT, ins_15222:TTTTATTT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:F12V
  • F:S190N
  • F:S211N
  • F:T245I
  • F:S389P
  • F:L513*
  • F:H514D

G

  • G:A74V
  • G:S100G
  • G:A116T
  • G:T131A
  • G:I137T
  • G:P214S
  • G:L217P
  • G:K223I
  • G:E224K
  • G:T226A
  • G:I252T
  • G:T254I
  • G:I268T
  • G:A269V
  • G:S275P
  • G:K276E
  • G:Y285H
  • G:S307L
  • G:*311Q

L

  • L:S169P
  • L:K570R
  • L:A1008V
  • L:N1727D
  • L:I1751V
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:S24N
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:D6N
Deletions
N/A
Insertions
N/A

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