PP_007A9HX.1

Brazil/ITpS_9u6_001Ww_001/2026-04-22
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-22
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.1

Host

Host
Host age
1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
4769

Submission details

Submission ID
ITpS_9u6_001Ww_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
14567 (97.9%)
# of SNPs
150
# of deleted bases
428
# of unknown bases
100
# of frame shifts
1
Frame shifts
F:174-575(nt:6194-7400)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C3G
  • A276G
  • G513T
  • G579A
  • C628T
  • T935C
  • C998A
  • G1385A
  • A1431C
  • A1432T
  • T1436C
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • T2589C
  • C2691T
Deletions
966, 967, 4580, 4581, 6192, 6193, 8447-8868
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:Q172H

G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:V249A
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:S309P

L

  • L:N142S
  • L:V179A
  • L:K570R
  • L:N590S
  • L:P1729T
  • L:S1746Y
  • L:T1758I
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I
  • N:E112A

NS1

  • NS1:K74E

NS2

  • NS2:Y118H
Deletions

F

F:173
Insertions
N/A

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