PP_007A9G0.1

Brazil/ITpS_Bj1_001Wu_001/2026-04-20
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-20
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
2
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
245

Submission details

Submission ID
ITpS_Bj1_001Wu_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15002 (97.6%)
# of SNPs
163
# of inserted bases
12
# of deleted bases
5
# of unknown bases
140
# of frame shifts
2
Frame shifts
M:257(nt:3988-3990),G:210-311(nt:5272-5578)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C3G
  • C152A
  • C212T
  • G513T
  • C564T
  • G579A
  • C598T
  • C688T
  • T707C
  • G709T
  • C952A
  • G955A
  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • C1792T
  • T1846C
Deletions
973, 4580, 4581, 5270, 5271
Insertions
ins_3200:GGAAGAA, ins_3987:ATATG

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T

L

  • L:S100T
  • L:K260R
  • L:K570R
  • L:M646L
  • L:L1718I
  • L:R1759K
  • L:R1872K
  • L:I1932V
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:D32E

NS2

  • NS2:N123K

P

  • P:T72A

SH

  • SH:D64N
Deletions

G

G:209
Insertions

M

ins_M:256:I

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