PP_007A9D6.1

Brazil/ITpS_lgs_001Wr_001/2026-04-20
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-20
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1

Host

Host
Host age
0.5
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
50

Submission details

Submission ID
ITpS_lgs_001Wr_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
14824 (91.9%)
# of SNPs
168
# of inserted bases
6
# of deleted bases
9
# of unknown bases
843
# of frame shifts
2
Frame shifts
G:178-311(nt:5177-5578),L:1545-2167(nt:13150-15018)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • A134G
  • G513T
  • G579A
  • C688T
  • C998A
  • T1126C
  • G1385A
  • T1698C
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • A2928G
  • G2977T
  • G3036C
  • A3060G
  • C3082T
Deletions
966, 967, 4586, 5231-5233, 9364-9366
Insertions
ins_3204:GAA, ins_5176:AC, ins_13149:C

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:R42K
  • F:S190N
  • F:S211N
  • F:S389P
  • F:I402V

G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:G135E
  • G:I137T
  • G:C174S
  • G:G175V
  • G:N176S
  • G:N177Y

L

  • L:T171A
  • L:K570R
  • L:S1017I

M2-1

  • M2-1:A154S
  • M2-1:I173V

N

  • N:V97I
  • N:I201T

P

  • P:D225Y

SH

  • SH:D64N
Deletions

L

L:283
Insertions
N/A

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