PP_007A9BA.1

Brazil/ITpS_1OT_001Wb_001/2026-04-13
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-13
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
1
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
696

Submission details

Submission ID
ITpS_1OT_001Wb_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15106 (98.5%)
# of SNPs
141
# of inserted bases
4
# of deleted bases
2
# of unknown bases
113

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • A131G
  • C212T
  • G409A
  • G513T
  • G547A
  • A571C
  • G579A
  • T592C
  • C594A
  • C666T
  • C883T
  • T996A
  • T1042C
  • A1057G
  • G1385A
  • A1462G
  • G1546A
  • T1555C
Deletions
973, 4586
Insertions
ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N

G

  • G:N4T
  • G:A74V
  • G:R98K
  • G:S100G
  • G:T130K
  • G:T131A
  • G:I137T
  • G:P150S
  • G:P214S
  • G:P221L
  • G:P229L
  • G:H257Y

L

  • L:G146D
  • L:I185V
  • L:K260R
  • L:K396R
  • L:I445V
  • L:K570R
  • L:D596G
  • L:K1704N
  • L:T1744A
  • L:R1759K
  • L:I1834V
  • L:T1987I

M

  • M:T89I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:S118N

NS2

  • NS2:T4K
  • NS2:T28I

P

  • P:D70N
  • P:D229G
Deletions
N/A
Insertions
N/A

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