PP_007A9AC.1

Brazil/ITpS_r2z_001Wa_001/2026-04-11
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-11
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.2

Host

Host
Host age
0.4
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
5491

Submission details

Submission ID
ITpS_r2z_001Wa_001
Submitting group
Date submitted
2026-08-03 14:36:17 UTC
Date released
2026-08-03 14:36:52 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15253 (100%)
# of SNPs
157
# of inserted bases
35
# of deleted bases
4

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • G409A
  • G513T
  • G579A
  • C583T
  • G599A
  • C829T
  • A965C
  • G1028A
  • A1132G
  • G1385A
  • G1417A
  • A1507G
  • G1732A
  • G1768A
  • T1846C
  • C2074T
Deletions
966, 967, 4580, 4581
Insertions
ins_0:ACAAACTTGCACACTCGAAAAAA, ins_15092:ATAT, ins_15222:TTTTATTT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:A116T
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:T254I
  • G:I268T
  • G:A269V
  • G:S275P
  • G:K276E
  • G:Y285H
  • G:S307L
  • G:*311Q

L

  • L:S169P
  • L:K570R
  • L:I1751V
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:S24N
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:S118N

NS2

  • NS2:D6N
Deletions
N/A
Insertions
N/A

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