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PP_007A83T.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/ITpS_F3L_001XH_001/2026-04-25
A. Pérez,
R. Moreira &
J. Dutra
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-04-25
Sampling location
Brazil (Minas Gerais)
City
Contagem
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage
Lineage
A.D.3.1
Host
Host
human (Homo sapiens)
Host age
0.3
Host gender
Male
Sequencing
Sequencing instrument
Illumina NextSeq
Depth of coverage
8298
Submission details
Submission ID
ITpS_F3L_001XH_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-08-03 14:17:38 UTC
Date released
2026-08-03 14:18:39 UTC
Earliest release date
2026-08-03
Alignment and QC
Length
15216 (100%)
# of SNPs
256
# of inserted bases
2
# of deleted bases
5
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
A
40
G
T
66
A
A
67
G
C
90
T
A
146
G
C
183
T
G
587
T
C
691
T
T
844
A
C
871
T
T
988
C
T
989
C
C
1012
T
G
1034
A
G
1049
A
G
1050
A
G
1077
A
T
1359
C
Show more
Deletions
3214, 3215, 4592, 15205, 15206
Insertions
ins_3154:A, ins_15213:C
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
T
12
I
F:
S
276
N
G
G:
T
4
A
G:
P
71
L
G:
H
90
Y
G:
L
101
S
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
T
148
K
G:
R
151
H
G:
N
157
S
G:
N
178
G
G:
G
224
E
G:
V
225
A
G:
P
230
T
G:
S
243
I
G:
S
250
L
G:
H
258
Q
G:
K
262
E
Show more
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
I
1523
V
L:
F
1668
Y
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
S
1755
F
L:
D
1985
Y
L:
C
2059
S
M2-1
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
M2-2:
I
46
L
M2-2:
T
77
A
N
N:
E
122
D
N:
V
352
A
NS1
NS1:
K
26
R
P
P:
L
55
P
P:
T
92
M
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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