PP_007A81X.1

Brazil/ITpS_L0N_001XF_001/2026-04-25
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-25
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.7

Host

Host
Host age
0.3
Host gender
Male

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
54029

Submission details

Submission ID
ITpS_L0N_001XF_001
Submitting group
Date submitted
2026-08-03 14:17:38 UTC
Date released
2026-08-03 14:18:39 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15275 (100%)
# of SNPs
235
# of inserted bases
59
# of deleted bases
9
# of frame shifts
1
Frame shifts
L:284-2166(nt:9379-15029)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T59C
  • T65A
  • G74A
  • C90T
  • C183T
  • T231C
  • G587T
  • T619C
  • G637A
  • T905C
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1080G
  • T1359C
  • T1413A
  • T1422C
Deletions
4586, 4587, 5648, 7581, 9377, 9378, 9388-9390
Insertions
ins_0:CGCGAAAAAATGTGTACAACAAACTTGC, ins_62:T, ins_67:G, ins_3154:A, ins_15053:CAAAAA, ins_15115:T, ins_15225:GTTTTTGACACTTTTTTTCTC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151Q
  • G:N178G
  • G:L208F
  • G:K221R
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L

L

  • L:S100T
  • L:P171L
  • L:S240N
  • L:R256K

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:G2D

P

  • P:L55P
  • P:T92M
Deletions

L

L:283
Insertions
N/A

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