PP_007A80Z.1

Brazil/ITpS_0Vb_001XE_001/2026-04-26
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-26
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.1.9

Host

Host
Host age
0.1
Host gender
Male

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
53091

Submission details

Submission ID
ITpS_0Vb_001XE_001
Submitting group
Date submitted
2026-08-03 14:17:38 UTC
Date released
2026-08-03 14:18:39 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
15211 (99.5%)
# of SNPs
234
# of inserted bases
16
# of deleted bases
3
# of unknown bases
42
# of frame shifts
2
Frame shifts
F:563-575(nt:7383-7421),L:148-2166(nt:8971-15029)

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • T210C
  • A399G
  • A500T
  • C528A
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • T922C
  • A954C
  • G955A
  • G1000A
Deletions
4592, 8969, 8970
Insertions
ins_0:GTATAACAAACTTGC, ins_7382:T

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A17V
  • F:V278A
  • F:S377N
  • F:I542V
  • F:K561N
  • F:D562N

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:L142S
  • G:P222L
  • G:G224E
  • G:L226H
  • G:G232R
  • G:T235A
  • G:S243I
  • G:G254E
  • G:K262E
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:Y304H
  • G:T320A

L

  • L:N143D

M

  • M:M43I

M2-1

  • M2-1:N142Y
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

NS2

  • NS2:K119T

P

  • P:L55P

SH

  • SH:I38S
Deletions

L

L:147
Insertions
N/A

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