PP_007A7UB.1

Brazil/ITpS_JVE_001X3_001/2026-04-23
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-04-23
Sampling location
Brazil (Minas Gerais)
City
Contagem

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.7

Host

Host
Host age
4
Host gender
Male

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
11243

Submission details

Submission ID
ITpS_JVE_001X3_001
Submitting group
Date submitted
2026-08-03 14:17:38 UTC
Date released
2026-08-03 14:18:39 UTC
Earliest release date
2026-08-03

Alignment and QC

Length
14840 (97%)
# of SNPs
223
# of inserted bases
73
# of deleted bases
2

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • G587T
  • T619C
  • G637A
  • T905C
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1080G
  • T1359C
  • T1413A
  • T1422C
  • C1488T
  • T1708C
  • C1788T
  • C1806T
  • C1818T
  • T1851C
Deletions
2292, 4592
Insertions
ins_3154:A, ins_5446:CTCTCAACCACCTCTGAAGGCTATCTAAGCCCATCACAAGTCTATACAACATCCGGTCAAGAGGAAACCCTC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151Q
  • G:N178G
  • G:L208F
  • G:K221R
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:P274L

L

  • L:S100T
  • L:P171L
  • L:S240N
  • L:R256K
  • L:K572R
  • L:Y598H
  • L:L835M
  • L:T964I
  • L:L1438Q
  • L:D1644E
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:H1804Y
  • L:R2117K

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions

G

ins_G:265:LSTTSEGYLSPSQVYTTSGQEETL

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