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PP_007A7D8.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/ITpS_pwy_001XR_001/2026-04-29
A. Pérez,
R. Moreira &
J. Dutra
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-04-29
Sampling location
Brazil (Minas Gerais)
City
Contagem
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage
Lineage
A.D.5.2
Host
Host
human (Homo sapiens)
Host age
2
Host gender
Male
Sequencing
Sequencing instrument
Illumina NextSeq
Depth of coverage
103
Submission details
Submission ID
ITpS_pwy_001XR_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-08-03 14:17:38 UTC
Date released
2026-08-03 14:18:39 UTC
Earliest release date
2026-08-03
Alignment and QC
Length
14672 (95.6%)
# of SNPs
219
# of inserted bases
1
# of deleted bases
50
# of unknown bases
172
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
T
246
C
G
288
A
T
697
C
T
922
C
A
940
C
T
1004
C
A
1009
G
A
1021
G
T
1028
C
G
1050
A
A
1051
C
A
1078
G
G
1131
A
G
1248
A
T
1254
C
T
1281
C
T
1359
C
G
1368
A
Show more
Deletions
2292, 4592, 5465-5512
Insertions
ins_7586:A
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
I
5
T
F:
L
6
F
F:
T
8
K
F:
T
13
I
F:
I
14
T
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
107
I
G:
I
134
K
G:
Q
140
R
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
G
232
E
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
V
303
A
G:
Y
304
H
G:
L
310
P
G:
T
319
I
G:
T
320
A
L
L:
N
142
S
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
G
1731
D
L:
T
1942
I
L:
V
1943
D
M
M:
M
73
L
M2-1
M2-1:
S
176
P
M2-2
M2-2:
S
22
N
M2-2:
S
44
N
N
N:
I
104
V
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
P:
E
239
D
Deletions
G
G:272-287
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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