Pathoplexus
Organisms
RSV-A
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Andes Virus [Hantavirus]
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Bundibugyo
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
RSV-A
|
Browse data
Submit sequences
Resources
Select organism section
Browse data
Submit sequences
Resources
PP_007A7CA.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/ITpS_OfX_001XQ_001/2026-04-29
A. Pérez,
R. Moreira &
J. Dutra
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-04-29
Sampling location
Brazil (Minas Gerais)
City
Contagem
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage
Lineage
A.D.3.3
Host
Host
human (Homo sapiens)
Host age
2
Host gender
Male
Sequencing
Sequencing instrument
Illumina NextSeq
Depth of coverage
7883
Submission details
Submission ID
ITpS_OfX_001XQ_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-08-03 14:17:38 UTC
Date released
2026-08-03 14:18:39 UTC
Earliest release date
2026-08-03
Alignment and QC
Length
15174 (100%)
# of SNPs
225
# of inserted bases
23
# of deleted bases
74
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
T
59
C
T
65
A
G
74
A
C
90
T
C
183
T
T
261
C
C
300
T
A
354
G
A
429
T
T
501
C
T
560
C
G
587
T
C
1012
T
G
1034
A
G
1050
A
G
1077
A
C
1100
T
T
1137
C
Show more
Deletions
3206, 3207, 5435-5506
Insertions
ins_0:ATGTGTATAAGAGACAGGC, ins_62:T, ins_67:G, ins_3154:A, ins_15225:G
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
T
12
I
G
G:
P
71
L
G:
H
90
Y
G:
L
97
F
G:
L
101
S
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
K
204
N
G:
G
224
E
G:
V
225
A
G:
S
243
I
G:
N
255
D
G:
H
258
Q
G:
H
290
L
G:
E
295
K
G:
Y
297
N
G:
E
308
K
G:
L
310
P
G:
L
314
P
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
H
1804
R
M2-1
M2-1:
P
120
L
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
M2-2:
H
45
Y
M2-2:
T
77
A
N
N:
V
352
A
NS1
NS1:
G
2
D
P
P:
L
55
P
P:
T
92
M
Deletions
G
G:262-285
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue