PP_0079F4L.1

Viet_Nam/HCM-VCM-260708309/2026-07-09
V. H. Pham, A. H. Pham, T. H. Nguyen, D. K. Tran, H. T. Pham, N. T. T. Tran & Q. D. Ha

Nam Khoa Biotek Ltd, Vietnam Institute of Research and Development Clinical Microbiology

Sample details

Collection date
2026-07-09
Sampling location
Viet Nam (Hochiminh)
Isolate name
HCM-VCM-260708309

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.3.1

INSDC

INSDC accession
NCBI release date
2026-07-22
NCBI update date
2026-07-22

Host

Host

Submission details

Submission ID
PZ705313.1
Submitting group
Date submitted
2026-07-23 05:02:16 UTC
Date released
2026-07-23 05:02:57 UTC
Earliest release date
2026-07-22

Alignment and QC

Length
15223 (100%)
# of SNPs
238
# of inserted bases
1
# of deleted bases
3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T64C
  • T66A
  • A67G
  • C90T
  • C183T
  • G587T
  • C597T
  • C691T
  • T775C
  • T844A
  • A847T
  • C871T
  • T988C
  • T989C
  • C1012T
  • C1025T
  • G1034A
  • G1050A
Deletions
3214, 3215, 4592
Insertions
ins_3154:A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:L20F
  • F:S276N
  • F:C550Y

G

  • G:P71L
  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:T137I
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:P230T
  • G:S243I
  • G:S250F
  • G:H258Q
  • G:K262E
  • G:E263K
  • G:I265L

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1523V
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-1

  • M2-1:P120S
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:I46L
  • M2-2:T77A

N

  • N:E122D
  • N:V352A

NS2

  • NS2:E83D

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

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