PP_0073CAP.1

USA/PP_0073CAP.1/2026-04-05
K. Smith, J. Martinez, H. Yu, B. Bertrand, M. Heck, A. Ramaiah & E. Kersh

GPHL, Bacteriology

Sample details

Collection date
2026-04-05
Sampling location
USA (Georgia)
Isolate name
RSV-20260601-020

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-14 05:32insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-06-13
NCBI update date
2026-06-13
Raw reads accession

Host

Host

Submission details

Submission ID
PZ495645.1
Submitting group
Date submitted
2026-06-14 05:32:12 UTC
Date released
2026-06-14 05:32:45 UTC
Earliest release date
2026-06-13

Alignment and QC

Length
15180 (93.7%)
# of SNPs
134
# of inserted bases
4
# of deleted bases
2
# of ambiguous bases
2
# of unknown bases
919

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A276G
  • G513T
  • G579A
  • C628T
  • C998A
  • G1324A
  • T1333C
  • G1385A
  • G1732A
  • G1768T
  • T1846C
  • T1921C
  • C2074T
  • A2089G
  • C2198T
  • T2346C
  • T2355C
  • T2406C
Deletions

973, 4586
Insertions

ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:I119L
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:A269V
  • G:S275P
  • G:Y285H

L

  • L:K570R
  • L:N590S
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F
  • M2-2:I54M

N

  • N:V97I

NS1

  • NS1:K74E

SH

  • SH:G58R
Deletions
N/A
Insertions
N/A

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