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PP_0072UYY.1
Download
Download FASTA
Download metadata TSV
PP_0072UYY.1
G. Calderon,
D. Enria,
S. Levis,
S. P. Morzunov,
N. Pini,
J. E. Rowe,
M. Sabattini,
S. C. St Jeor &
S. C. St. Jeor
University of Nevada, Microbiology
Sample details
Isolate name
Aa14403
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-10 15:37
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession M
AF028028.1
INSDC accession S
AF482717.1
NCBI release date
1997-12-01
Host
Host
Azara's grass mouse (Akodon azarae)
Submission details
Submission ID
AF028028.1.M/AF482717.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-10 15:37:12 UTC
Date released
2026-06-10 15:37:14 UTC
Earliest release date
1997-12-01
Alignment and QC
Length M
1654 (45.1%)
# of SNPs M
360
Length S
1860 (100%)
# of SNPs S
355
# of inserted bases S
27
# of deleted bases S
38
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
M
C
1461
A
C
1464
T
A
1467
C
T
1468
C
G
1470
T
A
1476
T
A
1479
G
C
1488
G
G
1491
A
A
1497
G
G
1502
C
C
1515
T
C
1522
T
T
1525
C
C
1526
T
A
1527
T
G
1542
A
G
1546
A
Show more
S
G
28
A
G
33
A
C
72
T
A
78
C
G
93
T
G
99
C
T
105
C
C
106
A
A
111
G
G
114
A
G
120
A
G
133
A
A
135
C
G
141
A
G
150
A
C
156
A
T
159
C
C
172
T
Show more
Deletions
S
1400-1404, 1442, 1469-1474, 1485, 1486, 1501-1507, 1514, 1529-1531, 1558, 1685-1693, 1707, 1745, 1746
Insertions
S
ins_1381:A, ins_1424:AT, ins_1554:CCCA, ins_1574:CA, ins_1585:TTAAGTA, ins_1626:GG, ins_1635:A, ins_1646:GCC, ins_1649:A, ins_1652:TC, ins_1755:G, ins_1769:T
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
G
484
A
GPC:
S
492
L
GPC:
V
499
I
GPC:
A
503
T
GPC:
V
504
I
GPC:
I
508
V
GPC:
K
510
R
GPC:
C
511
F
GPC:
R
513
K
GPC:
V
514
I
GPC:
L
515
V
GPC:
T
523
S
GPC:
F
530
L
GPC:
I
537
V
GPC:
S
563
A
GPC:
R
565
K
GPC:
I
579
M
GPC:
S
592
T
Show more
Gc
Gc:
M
5
L
Gc:
S
7
P
Gc:
I
19
L
Gc:
P
70
S
Gc:
T
78
I
Gc:
F
79
L
Gc:
A
90
E
Gc:
Q
92
K
Gc:
S
101
A
Gc:
I
149
V
Gc:
V
186
I
Gc:
P
231
T
Gc:
S
232
A
Gc:
V
306
I
Gc:
V
323
I
Gc:
A
329
S
Gc:
M
355
K
Gn
Gn:
G
484
A
Gn:
S
492
L
Gn:
V
499
I
Gn:
A
503
T
Gn:
V
504
I
Gn:
I
508
V
Gn:
K
510
R
Gn:
C
511
F
Gn:
R
513
K
Gn:
V
514
I
Gn:
L
515
V
Gn:
T
523
S
Gn:
F
530
L
Gn:
I
537
V
Gn:
S
563
A
Gn:
R
565
K
Gn:
I
579
M
Gn:
S
592
T
Show more
N
N:
Q
17
H
N:
A
31
T
N:
D
38
E
N:
T
76
A
N:
G
226
S
N:
D
234
E
N:
E
238
D
N:
V
252
T
N:
A
253
T
N:
M
263
A
N:
N
273
D
N:
K
276
Q
N:
Q
278
P
N:
I
281
A
N:
D
282
E
N:
D
285
E
N:
H
286
Q
N:
T
289
S
Show more
NSs
NSs:
Q
5
P
NSs:
R
7
K
NSs:
R
10
Q
NSs:
T
12
K
NSs:
L
13
S
NSs:
Q
23
R
NSs:
S
32
L
NSs:
N
34
S
NSs:
L
35
S
NSs:
N
38
S
NSs:
N
47
S
NSs:
N
51
S
NSs:
I
62
T
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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