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PP_0072UX0.1
Download
Download FASTA
Download metadata TSV
PP_0072UX0.1
G. Calderon,
D. Enria,
S. Levis,
S. P. Morzunov,
N. Pini,
J. E. Rowe,
M. Sabattini,
S. C. St Jeor &
S. C. St. Jeor
University of Nevada, Microbiology
Sample details
Isolate name
Bo13796
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-10 15:37
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession M
AF028027.1
INSDC accession S
AF482716.1
NCBI release date
1997-12-01
Host
Host
Dark-furred akodont (Necromys obscurus)
Submission details
Submission ID
AF028027.1.M/AF482716.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-10 15:37:12 UTC
Date released
2026-06-10 15:37:14 UTC
Earliest release date
1997-12-01
Alignment and QC
Length M
1654 (45.1%)
# of SNPs M
335
Length S
1869 (99.8%)
# of SNPs S
375
# of inserted bases S
33
# of deleted bases S
32
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
M
A
1458
G
C
1461
A
A
1467
G
T
1468
C
G
1470
A
A
1476
C
T
1480
C
C
1488
G
G
1491
A
A
1494
C
T
1495
C
A
1503
T
C
1509
T
C
1515
T
A
1516
C
C
1519
T
T
1521
G
A
1524
T
Show more
S
G
19
T
C
32
T
G
33
A
C
50
A
G
66
A
A
69
G
C
72
T
A
78
T
G
93
A
T
105
C
C
106
A
A
111
G
T
117
G
G
120
A
C
126
A
G
129
A
G
132
A
A
135
C
Show more
Deletions
S
1333, 1403, 1404, 1453, 1513, 1519, 1520, 1529-1531, 1574-1582, 1626-1630, 1636, 1637, 1661, 1680, 1681, 1745, 1746, 1804
Insertions
S
ins_1337:GGG, ins_1342:GGTGGTGT, ins_1368:G, ins_1383:T, ins_1477:GCACT, ins_1483:AAATACA, ins_1492:TT, ins_1545:C, ins_1554:CG, ins_1592:T, ins_1756:T, ins_1819:A
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
M
489
L
GPC:
S
492
L
GPC:
V
499
I
GPC:
A
503
T
GPC:
V
504
I
GPC:
I
508
V
GPC:
C
511
I
GPC:
R
513
K
GPC:
V
514
A
GPC:
N
524
S
GPC:
F
530
L
GPC:
I
537
V
GPC:
H
552
Q
GPC:
I
569
L
GPC:
I
579
M
GPC:
G
598
N
GPC:
K
614
R
GPC:
K
615
R
Show more
Gc
Gc:
M
5
L
Gc:
S
7
A
Gc:
I
19
L
Gc:
V
63
I
Gc:
P
70
N
Gc:
T
78
V
Gc:
F
79
L
Gc:
A
90
D
Gc:
Q
92
K
Gc:
S
101
A
Gc:
T
113
N
Gc:
V
134
I
Gc:
I
159
V
Gc:
V
186
I
Gc:
I
209
M
Gc:
A
220
S
Gc:
P
231
T
Gc:
G
248
H
Show more
Gn
Gn:
M
489
L
Gn:
S
492
L
Gn:
V
499
I
Gn:
A
503
T
Gn:
V
504
I
Gn:
I
508
V
Gn:
C
511
I
Gn:
R
513
K
Gn:
V
514
A
Gn:
N
524
S
Gn:
F
530
L
Gn:
I
537
V
Gn:
H
552
Q
Gn:
I
569
L
Gn:
I
579
M
Gn:
G
598
N
Gn:
K
614
R
Gn:
K
615
R
Show more
N
N:
T
3
N
N:
E
33
D
N:
D
38
E
N:
S
46
G
N:
L
84
I
N:
V
179
I
N:
A
202
V
N:
G
226
S
N:
D
234
E
N:
E
238
G
N:
V
252
T
N:
S
254
A
N:
A
256
T
N:
S
259
A
N:
M
263
A
N:
L
266
F
N:
N
273
D
N:
K
276
Q
Show more
NSs
NSs:
P
2
Q
NSs:
R
3
K
NSs:
R
4
K
NSs:
Q
5
P
NSs:
R
7
T
NSs:
R
10
Q
NSs:
T
12
R
NSs:
A
16
V
NSs:
L
26
Q
NSs:
S
32
L
NSs:
N
34
S
NSs:
L
35
S
NSs:
G
37
D
NSs:
N
38
S
NSs:
Q
40
L
NSs:
I
41
T
NSs:
I
62
T
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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