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PP_0072UW2.1
Download
Download FASTA
Download metadata TSV
PP_0072UW2.1
G. Calderon,
D. Enria,
S. Levis,
S. P. Morzunov,
N. Pini,
J. E. Rowe,
M. Sabattini,
S. C. St Jeor &
S. C. St. Jeor
University of Nevada, Microbiology
Sample details
Isolate name
Oc22531
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-10 15:37
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession M
AF028025.1
INSDC accession S
AF482713.1
NCBI release date
1997-12-01
Host
Host
Chacoan pygmy rice rat (Oligoryzomys chacoensis)
Submission details
Submission ID
AF028025.1.M/AF482713.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-10 15:37:12 UTC
Date released
2026-06-10 15:37:14 UTC
Earliest release date
1997-12-01
Alignment and QC
Length M
1654 (45.1%)
# of SNPs M
339
Length S
1933 (99.9%)
# of SNPs S
319
# of inserted bases S
78
# of deleted bases S
15
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
M
A
1458
T
C
1461
T
C
1464
T
A
1467
T
T
1473
A
A
1479
G
T
1480
C
A
1482
G
G
1491
A
T
1495
C
A
1497
G
T
1500
C
A
1503
G
C
1509
T
C
1511
G
C
1515
T
C
1522
T
A
1524
G
Show more
S
G
28
A
G
63
A
G
66
A
C
72
T
T
117
C
G
120
A
G
129
A
G
133
A
A
135
G
C
156
G
A
213
G
A
219
G
T
225
C
G
231
A
T
262
C
A
321
G
T
327
C
C
328
T
Show more
Deletions
S
1381, 1398-1400, 1500, 1543, 1555, 1556, 1633, 1634, 1645, 1656, 1672, 1745, 1746
Insertions
S
ins_1337:ACTATCAAAGCCATCACTGCCATAGGAGCCAATACTAGT, ins_1344:T, ins_1352:GGTTGGTT, ins_1377:AT, ins_1453:T, ins_1482:C, ins_1529:GGTAAGGTT, ins_1576:GATAGA, ins_1592:TGGAT, ins_1648:GA, ins_1666:G, ins_1690:T, ins_1756:T, ins_1805:A
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
T
487
S
GPC:
V
499
I
GPC:
V
504
I
GPC:
I
507
V
GPC:
I
508
V
GPC:
C
511
V
GPC:
R
513
K
GPC:
V
514
M
GPC:
L
515
V
GPC:
I
537
V
GPC:
V
550
I
GPC:
I
579
M
GPC:
Y
591
F
GPC:
S
592
A
GPC:
V
613
I
GPC:
K
614
R
GPC:
L
638
V
GPC:
I
644
L
Show more
Gc
Gc:
M
5
L
Gc:
I
19
V
Gc:
P
70
T
Gc:
S
101
A
Gc:
I
210
L
Gc:
P
231
T
Gc:
M
234
L
Gc:
E
282
D
Gc:
V
306
I
Gn
Gn:
T
487
S
Gn:
V
499
I
Gn:
V
504
I
Gn:
I
507
V
Gn:
I
508
V
Gn:
C
511
V
Gn:
R
513
K
Gn:
V
514
M
Gn:
L
515
V
Gn:
I
537
V
Gn:
V
550
I
Gn:
I
579
M
Gn:
Y
591
F
Gn:
S
592
A
Gn:
V
613
I
Gn:
K
614
R
Gn:
L
638
V
Gn:
I
644
L
Gn:
V
645
I
Gn:
I
646
V
N
N:
A
31
T
N:
D
38
E
N:
K
120
R
N:
A
121
S
N:
G
226
S
N:
D
234
E
N:
E
238
D
N:
V
252
A
N:
A
253
P
N:
S
259
A
N:
M
263
A
N:
I
281
V
N:
E
297
D
N:
S
332
A
NSs
NSs:
R
3
K
NSs:
Q
5
R
NSs:
T
12
R
NSs:
N
31
S
NSs:
E
33
G
NSs:
L
35
S
NSs:
G
37
D
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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