PP_0072CDK.1

Download

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Germany/PP_0072CDK.1/2026-05-08

B. B. Oude Munnink, D. F. Nieuwenhuijse, S. C. van den Boom, L. Zaeck, M. Boter, H. Cassidy, L. Schuele, R. Molenkamp, A. van der Eijk, C. GeurtsvanKessel & M. Koopmans

Erasmus MC

Sample details

Collection date

2026-05-08

Sampling location

Germany

Data use terms

Changed	User	Data use terms
2026-06-05 13:11	dnieuw	RESTRICTED until 2027-06-05

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Host

human (Homo sapiens)

Sequencing

Sequencing instrument

Oxford Nanopore GridION

Sequencing protocol

Amplicon

Submission details

Submission ID

EMC_Case2

Submitting group

ErasmusMC Viroscience

Date submitted

2026-06-05 13:11:41 UTC

Date released

2026-06-05 13:18:32 UTC

Earliest release date

2026-06-05

Alignment and QC

Length L

6430 (98%)

# of SNPs L

385

Length M

3495 (95.2%)

# of SNPs M

206

Length S

1756 (93.6%)

# of SNPs S

126

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T68G
C74T
C131T
C146T
C147T
G149A
C155T
C173T
T182C
T215C
A218G
A233C
T278C
A296G
T297C
A302G
T326C
T329C

M

T74C
T90C
G114A
C147T
C174T
C190T
A192G
C231T
C243T
A264G
T312C
C315T
G339C
T345C
A360G
T363C
A381G
T387C

S

G63A
G66A
G120A
A135G
T202C
A219G
T225C
T244C
T306C
G315A
A318G
C328T
C417T
C444A
G450A
T454C
C459T
G465A

Deletions

S

1443, 1573

Insertions

S

ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references