PP_00723R3.1

Bangladesh/PP_00723R3.1/2026-04-28
Md Abdullah Omar Nasif, Sharmin Sultana, Maruf Ahmed Bhuiyan, Mahbubur Rahman, Mohammad Rashedul Hassan, Farzana Islam Khan, Kyaw Thowai Prue Prince, Manjur Hossain Khan Jonny, Ahmed Nawsher Alam & Tahmina Shirin

Institute of Epidemiology, Disease Control and Research (IEDCR)

Sample details

Collection date
2026-04-28
Sampling location
Bangladesh (Narayanganj)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-02 11:13nasif181088OPEN
Data use terms URL

Genotype

Genotype
B3

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Collection device
Swab
Collection method
nasopharyngeal swab specimen

Host

Host

Sequencing

Sequencing date
2026-05-20
Sequencing instrument
Oxford Nanopore MinION Mk1D
Sequencing protocol
Sequences were generated through ARTIC measles 400bp Primer-scheme. Libraries were constructed using ONT-sqk-lsk114 sequencing kit
Depth of coverage
1441

Submission details

Submission ID
MeV2610052
Submitting group
Date submitted
2026-06-02 11:13:56 UTC
Date released
2026-06-02 11:15:36 UTC
Earliest release date
2026-06-02

Alignment and QC

Length
15470 (94.9%)
# of SNPs
789
# of deleted bases
1
# of unknown bases
393

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • C404A
  • A413G
  • T422C
  • T443A
  • A461G
  • C470T
  • C473T
  • A494G
  • C518T
  • C538T
  • A542G
  • C548T
  • A593C
  • T617C
  • C623T
  • G626A
  • C629T
  • C659T
Deletions

4527
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001498.1 reference

Substitutions

C

  • C:R13K
  • C:Q27K
  • C:R38T
  • C:T39S
  • C:K78R
  • C:S88P
  • C:M129K
  • C:G171E

F

  • F:V7I
  • F:I10V
  • F:T22A
  • F:A105V
  • F:Q139R
  • F:H419R
  • F:A512T

H

  • H:H17Y
  • H:A174T
  • H:A176T
  • H:N178T
  • H:S211G
  • H:V220I
  • H:G235E
  • H:S240N
  • H:H252Y
  • H:D283G
  • H:F284L
  • H:S285G
  • H:F296L
  • H:R302G
  • H:E303D
  • H:T307I
  • H:R334Q
  • H:I346V

L

  • L:V34L
  • L:R77K
  • L:A81T
  • L:E98R
  • L:T131I
  • L:I149V
  • L:I150T
  • L:K215R
  • L:A252T
  • L:K441R
  • L:R447K
  • L:V596I
  • L:S616N
  • L:P617S
  • L:R623K
  • L:K626R
  • L:E628A
  • L:V632I

M

  • M:K204R

N

  • N:S144F
  • N:N427S
  • N:G431R
  • N:G443N
  • N:Y451H
  • N:G455E
  • N:S456P
  • N:A462V
  • N:S470G
  • N:M471T
  • N:S481F
  • N:G482S
  • N:L505S
  • N:G509D
  • N:T514A

P

  • P:S26P
  • P:V29I
  • P:A34E
  • P:Q45H
  • P:D46E
  • P:E52K
  • P:E54K
  • P:G74S
  • P:I95A
  • P:R98G
  • P:T105A
  • P:C109R
  • P:H111Y
  • P:V120I
  • P:D136E
  • P:D146N
  • P:M175V
  • P:K195R

V

  • V:S26P
  • V:V29I
  • V:A34E
  • V:Q45H
  • V:D46E
  • V:E52K
  • V:E54K
  • V:G74S
  • V:I95A
  • V:R98G
  • V:T105A
  • V:C109R
  • V:H111Y
  • V:V120I
  • V:D136E
  • V:D146N
  • V:M175V
  • V:K195R
Deletions
N/A
Insertions
N/A

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