PP_0070VD6.1

USA/PP_0070VD6.1/2026-04-18
J. Garfin, M. Plumb, K. Pung, A. Mondelli, B. Weber, H. D. Kunerth, D. Evans, L. Bohnker-Voels, M. Anacker, J. Jencks & S. Namugenyi

Minnesota Department of Health Infectious Disease Laboratory Submission Group, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-04-18
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-04689

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-27 12:32insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-05-26
NCBI update date
2026-05-26
Raw reads accession

Host

Host

Submission details

Submission ID
PZ414345.1
Submitting group
Date submitted
2026-05-27 12:32:53 UTC
Date released
2026-05-27 12:33:06 UTC
Earliest release date
2026-05-26

Alignment and QC

Length
14870 (92.6%)
# of SNPs
140
# of inserted bases
4
# of deleted bases
1
# of unknown bases
774

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T479C
  • G513T
  • G579A
  • C817T
  • C998A
  • C1266T
  • T1354A
  • G1385A
  • G1732A
  • T1807C
  • T1846C
  • C2074T
  • C2198T
  • A2460G
  • A2486G
  • C2554T
  • C2691T
  • C2886A
Deletions

973
Insertions

ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S55N
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:I252T
  • G:S255P
  • G:K256N
  • G:I268T
  • G:A269V
  • G:S275P
  • G:Y285H

L

  • L:T188M
  • L:I369V
  • L:K570R
  • L:T1737A
  • L:R1759K
  • L:T1987I

M2-1

  • M2-1:I171V
  • M2-1:T180A

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:K34N
  • M2-2:D35N
  • M2-2:C49F

N

  • N:A57V
  • N:V97I

P

  • P:N61S
Deletions
N/A
Insertions
N/A

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