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PP_0070SLU.1
Download
Download FASTA
Download metadata TSV
USA/PP_0070SLU.1/2026-04-15
J. Garfin,
M. Plumb,
K. Pung,
A. Mondelli,
B. Weber,
H. D. Kunerth,
D. Evans,
L. Bohnker-Voels,
M. Anacker,
J. Jencks &
S. Namugenyi
Minnesota Department of Health Infectious Disease Laboratory Submission Group, Public Health Laboratory - Infectious Disease Lab
Sample details
Collection date
2026-04-15
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-04619
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-27 12:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A.D.3.9
INSDC
INSDC accession
PZ414275.1
BioProject accession
PRJNA1048457
BioSample accession
SAMN60159934
NCBI release date
2026-05-26
NCBI update date
2026-05-26
Raw reads accession
SRR38640882
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ414275.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-27 12:02:24 UTC
Date released
2026-05-27 12:02:44 UTC
Earliest release date
2026-05-26
Alignment and QC
Length
15047 (93.5%)
# of SNPs
228
# of inserted bases
7
# of deleted bases
7
# of unknown bases
808
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
C
90
T
C
183
T
T
372
C
C
411
A
G
587
T
C
589
T
G
1034
A
T
1035
A
G
1050
A
G
1077
A
A
1197
T
T
1359
C
T
1413
A
T
1422
C
C
1788
T
C
1806
T
C
2106
T
G
2136
A
Show more
Deletions
4174-4180
Insertions
ins_3154:A, ins_15115:TAATTT
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
T
12
I
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
113
I
G:
I
114
T
G:
V
131
D
G:
I
133
T
G:
I
134
K
G:
I
141
T
G:
N
178
G
G:
T
210
A
G:
G
224
E
G:
S
243
I
G:
S
250
P
G:
K
253
R
G:
H
258
Q
G:
K
262
E
Show more
L
L:
L
64
I
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
T
973
A
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
I
1800
M
L:
V
1803
A
M2-1
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
M2-2:
T
77
A
N
N:
V
352
A
P
P:
L
55
P
P:
T
92
M
SH
SH:
I
32
V
SH:
V
49
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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