PP_0070S3V.1

USA/PP_0070S3V.1/2026-04-06
J. Garfin, M. Plumb, K. Pung, A. Mondelli, B. Weber, H. D. Kunerth, D. Evans, L. Bohnker-Voels, M. Anacker, J. Jencks & S. Namugenyi

Minnesota Department of Health Infectious Disease Laboratory Submission Group, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-04-06
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-04601

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-27 12:02insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.7

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-05-26
NCBI update date
2026-05-26
Raw reads accession

Host

Host

Submission details

Submission ID
PZ414258.1
Submitting group
Date submitted
2026-05-27 12:02:24 UTC
Date released
2026-05-27 12:02:44 UTC
Earliest release date
2026-05-26

Alignment and QC

Length
15057 (91.6%)
# of SNPs
213
# of inserted bases
11
# of deleted bases
1
# of unknown bases
1108

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • T231C
  • G587T
  • T619C
  • G637A
  • G1034A
  • G1049A
  • G1050A
  • G1077A
  • A1080G
  • T1359C
  • T1413A
  • T1422C
  • T1708C
  • C1728T
  • C1788T
  • C1806T
Deletions

4592
Insertions

ins_1069:AA, ins_2297:AA, ins_15053:CAAAAA, ins_15111:A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:H67N
  • G:P71L
  • G:I76M
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151Q
  • G:N178G
  • G:K212R
  • G:K221R
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:Y684C
  • L:L835M
  • L:L1438Q
  • L:G1550S
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:R2117K

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

P

  • P:T92M
Deletions
N/A
Insertions
N/A

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